The viz moduleΒΆ
The viz module exists to make visualising simulation output quick and easy for common patterns, such as plotting time courses or comparing parameter estimation output to experimental data. However it should be emphasised that the matplotlib and seaborn libraries are always close to hand in Python.
The viz module is currently in a state of rebuilding and so I only describe here the features which currently work.
Parse |
General class for parsing copasi output into Python. |
PlotTimeCourse |
Plot time course data |
Boxplots |
Plot a boxplot for multi parameter estimation data. |