pycotools3.tasks.Sensitivities

class pycotools3.tasks.Sensitivities(model, **kwargs)

Interface to COPASI sensitivity task

__init__(model, **kwargs)

Initialize self. See help(type(self)) for accurate signature.

Methods

__init__(model, **kwargs)	Initialize self.
add_list_of_variables_element()
check_integrity(allowed, given)	Method to raise an error when a wrong kwarg is passed to a subclass
convert_bool_to_numeric(dct)	CopasiML uses 1’s and 0’s for True or False in some but not all places.
convert_bool_to_numeric2()	CopasiML uses 1’s and 0’s for True or False in some but not all places.
create_new_report()
create_problem()
create_sensitivity_task()
get_component(model, component, string)	Get component called string from model
get_report_key()
get_single_object_references()
get_variable_from_string(m, v[, glob])	Use model entity name to get the pycotools3 variable
process_data()
read_model(m)	param m:
replace_sensitivities_task()
run_task()
sensitivity_task_key()	Get the sensitivity task as it currently is in the model as etree.Element :return:
set_cause()
set_effect()
set_method()
set_report()
set_secondary_cause()
set_subtask()
update_properties(kwargs)	method for updating properties from kwargs

Attributes

cross_section_cause
cross_section_effect
evaluation_cause
evaluation_effect
optimization_cause
optimization_effect
parameter_estimation_cause
parameter_estimation_effect
schema
sensitivitity_number_map
steady_state_cause
steady_state_effect
subtasks
time_series_cause
time_series_effect
update_model

add_list_of_variables_element()

create_new_report()

create_problem()

create_sensitivity_task()

get_report_key()

get_single_object_references()

process_data()

replace_sensitivities_task()

run_task()

sensitivity_task_key()

Get the sensitivity task as it currently is in the model as etree.Element :return:

Args:

Returns:

set_cause()

set_effect()

set_method()

set_report()

set_secondary_cause()

set_subtask()