Examples

• Working with an existing copasi model
  • Create a PyCoTools model from an existing model
  • Extracting the antimony string associated with a copasi model
• Integration with Tellurium
• Simple Parameter Estimation
• Simple Parameter with Steady State Data
• Parameter Estimation using Prefix Argument
• Parameter Estimation with Independent Variables
• Advanced Parameter Estimation
  • Models
  • Datasets
  • Items
  • Settings
  • Building a ParameterEstimation.Config object
  • Using a ParameterEstimation.Context as a template
• Multiple Parameter Estimations
  • Increasing Parameter Estimation Throughput
• Parameter estimation with multiple models
• Working from the model.Model class directly
  • Inserting parameters
  • Simulating a time course
  • Sensitivities
• Profile Likelihoods
• Cross validation