pycotools3.tasks.Scan¶
-
class
pycotools3.tasks.
Scan
(model, **kwargs)[source]¶ Interface to COPASI scan task
Scan Kwargs Description update_model Default: False subtask Default: parameter_estimation report_type Default: profile_likelihood. Name of report from Reports
classoutput_in_subtask Default: False adjust_initial_conditions Default: False number_of_steps Default: 10 maximum Default: 100 minimum Default: 0.01 log10 Default: False distribution_type Default: normal scan_type Default: scan scheduled Default: True save Default: False clear_scans Default: True. If true, will remove all scans present then add new scan run Default: False <report_kwargs> Arguments for report_kwargs are also accepted here Args:
Returns:
Methods
__init__
(model, **kwargs)param model: check_integrity
(allowed, given)Method to raise an error when a wrong kwarg is passed to a subclass convert_bool_to_numeric
(dct)CopasiML uses 1’s and 0’s for True or False in some but not all places. convert_bool_to_numeric2
()CopasiML uses 1’s and 0’s for True or False in some but not all places. create_scan
()metabolite cn: define_report
()Use Report class to create report :return: execute
()get_report_key
()get_variable_from_string
(m, v[, glob])Use model entity name to get the pycotools3 variable read_model
(m)param m: remove_scans
()Remove all scans that have been defined. set_scan_options
()update_properties
(kwargs)method for updating properties from kwargs Attributes
schema